Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs34807814 chr2:239104639 T/TG 0.000113 170 33.32 20.13 19.87 KM Plot
PCPG rs34810851 chr14:74341128 C/G 9.6E-6 178 25.47 28.3 10.3 KM Plot
PCPG rs34820661 chr2:107213578 CT/C 0.000256 174 26.57 23.53 25.92 KM Plot
PCPG rs34826545 chr17:50299063 A/G 6.24E-5 177 25.4 28.47 14.47 KM Plot
PCPG rs34846031 chr16:1770201 G/A 2.12E-11 172 25.67 18.2 4.52 KM Plot
PCPG rs34849731 chr16:71578927 G/A 0.000145 174 25.17 29.57 15.82 KM Plot
PCPG rs34850152 chr16:90058161 T/TG 1.09E-8 172 25.77 20.28 6.62 KM Plot
PCPG rs34851373 chr15:31101436 G/A 1.11E-16 172 25.92 23.83 2.12 KM Plot
PCPG rs34856800 chr3:150895382 T/C 0.000407 171 24.85 29.43 60.03 KM Plot
PCPG rs34859361 chr14:74341604 C/T 9.6E-6 178 25.47 28.3 10.3 KM Plot
PCPG rs34872575 chr3:52986277 G/A 6.56E-6 176 25.17 26.57 11.78 KM Plot
PCPG rs34887893 chr17:50302857 C/T 3.24E-5 178 26.57 27.2 14.43 KM Plot
PCPG rs34888109 chr13:37543553 AT/A 0.000337 176 4.17 24.17 25.87 KM Plot
PCPG rs34889414 chr17:50276929 C/G 6.66E-5 177 25.77 27.95 14.47 KM Plot
PCPG rs34902125 chr16:71477413 CA/C 0.000119 177 24.5 27.22 43.12 KM Plot